Cascade hop genome sequenced with PacBio long-reads, assembled with FALCON, and phased with FALCON-Unzip


         Download assembly     FASTA


Repeats identified with LTRharvest and RepeatMasker


         Download repeat coordinates     GFF


Gene models predicted with Augustus


         All gene models

         Download peptide sequences     FASTA

         Download CDS     FASTA

         Download gene GFF     GFF

         Repeat-filtered gene models

         Download repeat-filtered peptide sequences     FASTA

         Download repeat-filtered CDS     FASTA


RNA-seq aligned to primary contig assembly with HISAT2 and assembled into transcripts with StringTie


         Download merged StringTie transcripts from leaf, meristem, and stem     GFF3

         Download StringTie leaf transcript coordinates     GFF3

         Download StringTie meristem transcript coordinates     GFF3

         Download StringTie stem transcript coordinates     GFF3