Cascade genome assembled from PacBio long reads with FALCON-Unzip


         Download assembly     Masked assembly containing 37443 contigs (FASTA: 1.77Gb)


Repeats identified with RepeatMasker and LTRharvest


         Download repeat coordinates      (GFF: 221.90 Mb)


Cascade gene models predicted with Augustus


         Download transcript sequences      (FASTA: 69.13 Mb)

         Download CDS      (FASTA: 37.14 Mb)

         Download peptide sequences      (FASTA: 12.68 Mb)


         RNA-seq aligned to masked haplotig assembly with HISAT2 and assembled into transcripts with StringTie


         Download merged StringTie transcripts from leaf, meristem, and stem     GFF3: 22.01 Mb

         Download StringTie leaf transcripts     GFF3: 12.81 Mb

         Download StringTie meristem transcripts     GFF3: 17.74 Mb

         Download StringTie stem transcripts     GFF3: 16.33 Mb


         Masked haplotigs aligned to UniProt proteins with blastp


         Download UniProt alignments     GFF3: 999.27 Mb